Description

Provides structured access to NONMEM pharmacometric modeling workflows in three phases: parsing and analysis (parameter estimates, termination status, control stream parsing, dataset summaries, multi-run comparison), execution and diagnostics (run submission, monitoring, VPC and bootstrap via PsN), and simulation (mrgsolve model translation and PK simulations). Includes prompt templates for model review, interpretation, troubleshooting, and methods section drafting.

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Installation 

git clone https://github.com/sueinchoi/nonmem-mcp-server

Claude Desktop Configuration

Add this configuration to your Claude Desktop config file to enable this MCP server:

Config file location: ~/Library/Application Support/Claude/claude_desktop_config.json

Config file location: %APPDATA%\Claude\claude_desktop_config.json

Config file location: ~/.config/Claude/claude_desktop_config.json

claude_desktop_config.json 
{
  "mcpServers": {
    "nonmem-pharmacometrics": {
      "command": "node",
      "args": [
        "path/to/server.js"
      ]
    }
  }
}

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