Description

Integrates with RCSB Protein Data Bank, PDBe, and UniProt to provide comprehensive access to 3D protein structural data. Supports structure search and retrieval, similarity analysis for identifying related proteins, ligand binding site tracking, and multi-structure comparisons with alignment metrics. Built with multi-provider orchestration for robust data access and edge-ready deployment capabilities.

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Installation 

git clone https://github.com/cyanheads/protein-mcp-server

Claude Desktop Configuration

Add this configuration to your Claude Desktop config file to enable this MCP server:

Config file location: ~/Library/Application Support/Claude/claude_desktop_config.json

Config file location: %APPDATA%\Claude\claude_desktop_config.json

Config file location: ~/.config/Claude/claude_desktop_config.json

claude_desktop_config.json 
{
  "mcpServers": {
    "protein": {
      "command": "node",
      "args": [
        "path/to/server.js"
      ]
    }
  }
}

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